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== Basic Anatomy and Physiology ==
 
== Basic Anatomy and Physiology ==
=== Introduction ===
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The intestines are a portion of the alimentary tract extending from the pylorus to the anus.  In mammals, the intestines are divided into two main segments:  the small intestine and the large intestine.  The small intestine, consisting of the duodenum, jejunum and ileum, acts as the main site of absorption for digestive products in the gastrointestinal tract. The large intestine, consisting of the caecum and colon, functions to extract water, electrolytes and nutrients as well as to concentrate and propulse faecal material to the rectum for defaecation. (Dyce et. al, 2002; Young & Heath, 2000).
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Functional differences between the small and large intestine are reflected in their anatomic and histologic organisation (Figure 1).  The small intestinal mucosa in many species is highly folded and made up of numerous villi that greatly increase the absorptive surface area.  Enterocytes, which are important in nutrient absorption, are the most numerous and characteristic cells of the small intestinal epithelium. Others include goblet cells, paneth cells, neuroendocrine cells, stem cells, and intraepithelial lymphocytes. Another important feature of the small intestine is the presence of Peyer's patches within the lamina propria.  They contribute to immune function and generation of immune responses within the mucosa. 
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In contrast to the small intestine, the large intestinal mucosa has no villi and consists of 2 main cell types:  absorptive cells and mucus secreting goblet cells. A distinguishing histologic and anatomic characteristic is the thick muscularis mucosa layer that aids in propulsion of faeces to the rectum.  Another important feature is the presence of commensal bacteria which plays different roles depending upon the type of animal species.
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=== Defense Mechanisms ===
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==== Secretions ====
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*Mucus - inhibits contact and protects the mucosal surface
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*Digestive enzymes - nonspecifically target bacteria and viruses
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*Bile - kills some bacteria and viruses
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==== Epithelium ====
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*"Tight junctions" between epithelial cells prevent entry of macromolecules and pathogens into the intestinal tract.
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*Epithelial cells have a very high turnover rate thus preventing pathogens with a longer life cycle from successfully colonising.
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==== Commensal flora ====
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*Commensal flora competitively inhibit attachment of pathogens to enterocytes in addition to competing for nutrition and substrates.  Many also produce inhibitory growth substances that are toxic to other bacteria (McGavin and Zachary, 2007).
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==== Movement ====
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*Continuous peristalsis discourages persistence of toxins and aids in their elimination from the gut. 
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==== Cell-mediated and humoural defences ====
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*The lamina propria contains macrophages, B and T lymphocytes, plasma cells, and mast cells.
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*Lymphoid aggregates known as Peyer's patches within the small intestine aid in immunity.
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*Secretory IgA and IgM provide humoural immunity and help prevent attachment of pathogens to the intestinal epithelium.
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*Lysozyme from Paneth cells inhibits bacterial growth (McGavin & Zachary, 2007).
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=== Comparative ===
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carnivores, ruminants,horse, swine, rabbits [Figure]
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'''References''' <br /br>
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Dyce KM, Sack WO, Wensing, CJG:  Textbook of Veterinary Anatomy, 3rd ed, p. 129. Saunders, London, England, 2002.
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McGavin DM & Zachary, JF: Pathologic Basis of Veterinary Disease, 4th ed, pp. 301-393. Elsevier, St. Louis, Missouri, 2007.
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Young B, Heath, JW:  Wheater's Functional Histology:  A Text and Colour Atlas, 4th ed, pp. 249-274. Churchill Livinstone, London, England, 2000.
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== Pathology ==
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=== Developmental Anomalies ===
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==== Segmental ====
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Segmental anomalies of the intestines are common and range from incomplete occlusion (stenosis) to complete occlusion (atresia) of the lumen.
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===== Atresia ani =====
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*A common congenital defect of the lower gastrointestinal tract. 
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*Both the anus and rectum can be affected.
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*Occurs in all species but is most often seen in calves and pigs.
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===== Atresia coli =====
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*Considered the most common segmental anomaly of the intestine in domestic animals. 
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*Can affect in particular the spiral colon of Holstein calves and the small colon of foals.
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===== Atresia ilei =====
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*It is less common to see atresia in the small intestine.
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*Mostly seen in calves.
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==== Persistent Meckel's diverticulum ====
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*Meckel's diverticulum is a remnant of the omphalomesenteric duct of the yolk sac. 
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*Is usually an incidental finding though it can be associated with impaction and or intussusception. 
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==== Megacolon ====
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*Occurs in cats, dogs, and pigs.
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*May be due to a lack of myenteric plexuses that occurs when  neuroblasts fail to migrate from the nerual crest to the colorectal myenteric plexuses. 
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*Congenital colonic agangliosis, a condition occurring in white foals, can lead to megacolon.  It is thought to be an autosomal recessive condition.
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'''References''' <br /br>
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Brown CC, Baker DC, Barker IK:  Alimentary System. In: Jubb, Kennedy and Palmer's Pathology of Domestic Animals, ed. Maxie MG, 5th ed., pp. 1-296. Elsevier, Philadelphia, PA, 2007.
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McGavin DM & Zachary, JF: Pathologic Basis of Veterinary Disease, 4th ed, pp. 301-393. Elsevier, St. Louis, Missouri, 2007.
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=== Physical Disturbances ===
 
=== Physical Disturbances ===
 
==== Obstruction ====
 
==== Obstruction ====
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